RAPSODY

Re-Assessment of Pathogenicity of SAVs based On Dynamics

This tool provides a prediction of pathogenicity for Single Amino acid Variants (SAVs) by employing a Random Forest classifier trained on both sequence-based and structural/dynamical features. Please cite: Ponzoni Luca and Ivet Bahar, "Structural dynamics is a determinant of the functional significance of missense variants." PNAS (2018): 201715896.


Option 1: Get predictions based on both
sequence-based and structural/dynamical features,
by uploading a:
PolyPhen-2 output file (see instructions)


Option 2: Alternatively, you can get predictions
based only on structural/dynamical features.
2.1: single query (e.g.: P17516 135 G E)
2.2: batch query

email (optional):